Applications

Online tools

• BOMP - Prediction of beta-barrel outer-membrane proteins
• Genetools - Collection of web-based tools particularly useful for genome-wide analyses
• Ka/Ks - Calculation of ratio of nonsynonymous (Ka) to synonymous (Ks) nucleotide substitution rates
• LIPO - Prediction of lipo-boxes in Gram-negative bacterial protein sequences
• ParAlign - Sensitive BLAST-like tool for similarity searches tool in sequence databases
• Pratt - Pattern discovery in sets of unaligned protein sequences
• Stitchprofiles.uio.no - Computations on DNA melting
• TMM@ - Tool for studying the mobility of transmembrane alpha-helices in proteins
• WEBnm@ - Computation and analysis of low-frequency normal modes for proteins

Databases

• ELM - Prediction of functional linear motifs in eukaryotic proteins
• repairGenes - Database on genes involved in DNA repair
• TAED - The Adaptive Evolution Database

Software

• J-Express - Application for processing, analysis and visualization of microarray data
• Phyrex - Program for reconstruction of continuous character trait values at nodes of phylogenetic trees
• SciCraft - Application for software and method integration

Web services

• CBU Web services - List of available SOAP Web services from CBU