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File Genesets: MSigDB
.gmt file containing genesets from MSigDB
File RatBrainCortex.pro
J-Express project file
File Exercise: Gene Set Enrichment Analysis
Exercises as PDF
File Exercise: Differential Expression
Exercise: Differential Expression in PDF
File Gene Set Enrichment Analysis
Presentation in PDF
Course J-Express Microarray Analysis Course, Bergen, April 20-22, 2010
<p>We intend to focus on practicals in this course, main topics to be covered are:</p> <ul><li>Working with J-Express ...
CourseNewsItem Course News: J-Express Microarray Analysis Course, Bergen, April 20-22, 2010
This is a course at the second level of NMC's course series. Participants should have attended a course at the introductory level or have equivalent ...
File Gene Set Enrichment Analysis
File AB1700 Rat Annotation file
AB1700 Rat Annotation file
File Exercise_Annotation
Exercise: Add Annotation to data in J-Express
File c2.v2.symbols.gmt
MSigDB: Curated gene set file. Dated 2007
File Exercise_GeneOntology
Exercise: Gene Ontology
File geneontology.obo.zip
Zipped Gene Ontology Obo file. Nov. 2009
File Gene_association.rgd.zip
Rat gene association file
File Exercise_GSEA
Exercise: Gene Set Enrichment Analysis
File J-Express Differensielt uttrykk
J-Express Exercise: Differential expression
File Exercise_Explorative_Analysis
File Dataset
Rat brain profiling
File J-Express basics
File J-Express fundamentals
Page Course homepage
Presentations, exercises and files needed for the exercises will be posted here
CourseNewsItem Course News: Course in analyzing microarrays using J-express 2009
This is a 3 day course where J-Express will be used as an analysis tool. This course builds on the Introduction to microarrays course, so knowledge about ...
Course Course in analyzing microarrays using J-express 2009
<p>This is a 3 day course where J-Express will be used as an analysis tool. This course builds on the Introduction to microarrays course, so ...
CourseNewsItem Course News: Introduction to Microarrays Course, Bergen, September 17th-18th, 2009
This is an introductory course to microarrays, where the aim is for participants to get familiar with different types of technologies for measuring gene ...
CourseNewsItem Course News: Microarray data analysis workshop in Bergen, Autumn 2009
Norwegian Microarray Consortium (NMC) Bergen node has planned a series of workshops this autumn, with the first one out 28th of August. The idea is that ...
Course Introduction to Microarrays Course, Bergen, September 17th-18th, 2009
<p>The course last two days, where day one is focusing on microarray technologies and experimental design and day two is devoted to introduction to data ...
Page Introduction to Microarrays Course, Bergen, September 17th-18th, 2009
Page Microarray data analysis workshop homepage in Bergen
Course Microarray data analysis workshop in Bergen, Autumn 2009
<p>Questions that could be of general interest or topics for discussion should be submitted to the NMC staff prior to the workshop, who then plan the plenary ...

ELIXIR: European Bioinformatics Infrastructure
The European Bioinformatics Infrastructure is one of 35 projects on the roadmap made by the European Strategy Forum on Research Infrastructures (ESFRI) from 2006. An EU funded preparatory project, named ELIXIR,is currently on‐going to prepare plans for operaton in the period 2011‐2018. Read more...

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Recent Publications

Pendino, F., Nguyen, E., Jonassen, I., Dysvik, B., Azouz, A., Lanotte, M., Ségal-Bendirdjian, E., and Lillehaug, J. R. (2009) Functional involvement of rinf, retinoid-inducible nuclear factor (cxxc5), in normal and tumoral human myelopoiesis. Blood 113, 3172-3181. [ http ]

Rajcevic, U., Petersen, K., Knol, J. C., Loos, M., Bougnaud, S., Klychnikov, O., Li, K. W., Pham, T. V., Wang, J., Miletic, H., Peng, Z., Bjerkvig, R., Jimenez, C. R., and Niclou, S. P. (2009) itraq-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype. Mol Cell Proteomics 8, 2595-2612. [ http ]

Giegerich, R., Brazma, A., Jonassen, I., Ukkonen, E., and Vingron, M. (2008) The brew workshop series: a stimulating experience in phd education. Brief Bioinform 9, 250-253. [ http ]

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