Course homepage
J-Express Microarray Analysis Course 20-22 April
On this course webpage we will collect related material to the course, such as presentations, exercises, needed files and live documentation (that appear throughout the course).
Miscellanous
Presentations (Print yourself if you like a copy)
- (To be expected appearing Friday 16th and Monday 19th)
- Microarray pipeline
- Preprocessing
- Technology introduction
- Course data set presentation
- Basics and Fundamentals
- Experimental Design
- Explorative Approaches
- Gene Ontology Overrepresentation Analysis
- Gene Set Enrichment Analysis
- Differential Expression presentation AK
Files needed for exercises
- RatBrainProfiling.pro
- RatBrainCortex.pro
- GeneSets: MSigDB
- gene_ontology.obo.zip
- gene_association.rgd.zip
- c2.all.v2.5.symbols.gmt
Exercises (Hand-outs will be provided at the course)
- Exercise 1: J-Express Basics
- Exercise 2: J-Express Fundamentals
- Exercise 3: Explorative approaches
- Exercise 4: Differential Expression
- Exercise 5: Gene Ontology overrepresentation
- Exercise 6: Gene set enrichment analysis
